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Version 1.0.1 of Parente is currently available for 64-bit Linux.

Usage

parente train [options] <train.hap> <markers.map> <train-out-prefix>

parente infer [options] <train-out-prefix> <cohort.geno> <threshold> <out-prefix>

Example data

The example data is a small portion of the data from HapMap3. View the README inside to explain what each file is.

Quick start

To run using the default parameters:

parente train  train.hap  markers.map  train-output

parente infer  train-output  cohort.geno  0  infer-output