Overview

Parente2 operates in two phases, first it uses training haplotypes in order to learn the distribution of scores for IBD segments and the distribution of scores for non-IBD segments. With these distributions, Parente2 can use the embedded likelihood ratio test (eLRT).

Parente is runs on one contiguous chromosome at a time.

Further documentation details are coming soon. Documentation for the previous version of Parente are available here